tag:blogger.com,1999:blog-329801097007474097.post5328533518871081065..comments2019-10-23T10:59:40.043+02:00Comments on Computational Chemistry Highlights: Popular Integration Grids Can Result in Large Errors in DFT-Computed Free EnergiesComputational Chemistry Highlightshttp://www.blogger.com/profile/12737582958414627004noreply@blogger.comBlogger2125tag:blogger.com,1999:blog-329801097007474097.post-19088709729530478962019-10-22T13:23:13.016+02:002019-10-22T13:23:13.016+02:00I am glad to locate your recognized method for com...I am glad to locate your recognized method for composing the post. Presently you make it simple for me to comprehend and actualize the idea. Much obliged to you for the post. <a href="https://flevy.com/blog/how-to-achieve-greater-value-in-ma-do-the-fundamentals-of-post-merger-integration/" rel="nofollow">Post-merger Integration</a><br />Sarah Jacbhttps://www.blogger.com/profile/04808548257222989033noreply@blogger.comtag:blogger.com,1999:blog-329801097007474097.post-79236746166905432702019-08-01T13:58:55.569+02:002019-08-01T13:58:55.569+02:00The article in C&EN that picked up on the orig...The article in C&EN that picked up on the original preprint provoked me to post a comment, which I reproduce here:<br /><br />I would strongly disagree with the characterisation of the described problem as "flaw inherent to DFT": the problem is entirely a numerical one. As ever in computational science, the translation of a, perhaps even exact, theoretical model into a practical, computationally efficient method involves a plethora of approximations. The accuracy of these approximations is normally controlled by some parameters that need to be carefully chosen by the developer or the user, and the right choice is normally system- and application-dependent. So far so unsurprising.<br /><br />For the specific case of the reliability/robustness of free energies of "floppy" molecules calculated within the harmonic-oscillator model using DFT, two quite separate issues need to be distinguished:<br /><br />1) The numerical problems introduced by the integration grid affect mostly low vibrational frequencies. These low frequencies contribute substantially to the vibrational entropy, which is used to compute the free energy. However, the frequencies are obtained within the harmonic-oscillator model, which is invalid for low-frequency vibrational modes. Such modes are significantly anharmonic or even correspond to hindered rotations, rather than vibrations. So notwithstanding their numerical robustness, these frequencies have little physical meaning, but they unduly affect the result.<br />This is a well-understood and widely known limitation of the standard quantum-chemical approach to calculating free energies. Various solutions have been proposed to eliminate, or at least alleviate, this problem. A simple, effective approach, proposed by Truhlar et al., is to raise all vibrational frequencies below a certain threshold (e.g., 100 cm^–1) up to that threshold. This removes the dependence of the free energy on the exact numerical values of low frequencies, which are physically ill-justified anyway.<br />Moreover, when things are really "floppy", e.g., two or more initially separate molecules associating into a transition state, the free-energy minimum may differ significantly from the potential-energy minimum. The basic underlying assumption of "static" computational thermochemistry that thermodynamic quantities can be calculated as "single-point corrections" at the potential-energy minimum no longer holds in such cases.<br /><br />2) Purely numerical accuracy and robustness is quite a separate matter. Irrespective of the physical validity of the approach, the user is entitled to expect that the values obtained (here, the low harmonic frequencies) are numerically accurate and robust. I would therefore agree to this limited extent only that the original article has highlighted an issue that developers should try to address, e.g., by appropriate warnings or automatic tests.hmshttps://www.blogger.com/profile/02697694372546128468noreply@blogger.com